This is an attempt to separate our publications by product type. This is a list for our sequencing services and where they have been mentioned. As always this is wip and I hope to continue to complete this.
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2021
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Blue laser-induced selective vasorelaxation by the activation of NOSs
… (Ocimum Biosolutions, India). Gene classification was based on searches done by DAVID (
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2020
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[HTML] Skin hydration effects of scale-up fermented Cyclopia intermedia against ultraviolet B-induced damage in keratinocyte cells and hairless mice
representative transcript sequences … (Ocimum Biosolutions, India). Genes were classified based …
[HTML] An overview of pulmonary infections due to rapidly growing mycobacteria in South Asia and impressions from a subtropical region
Automated Sequencer (Ocimum Biosolutions, Bengaluru, India). Sequences were identified by …
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2017
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[PDF] Sequence analysis and PCR-RFLP of growth hormone (GH) gene in Vembur and Kilakarsal breeds of sheep
3730XL DNA analyzer (Applied Biosystems, USA). The variation in sequences among Vembur …
[HTML] Purinergic receptors P2Y12R and P2X7R: potential targets for PET imaging of microglia phenotypes in multiple sclerosis
Ijsselstein, The Netherlands). RNA … All primer sequences are listed in Additional file 1: Table S2.
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2016
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A study on metabolic prowess of Pseudomonas sp. RPT 52 to degrade imidacloprid, endosulfan and coragen
India for sequencing. The 16S rDNA sequenceof RPT 52 obtained after sequencing was …
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2015
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[PDF] Cloning and expression of variant chiA from native Serratia marcescens AUDS227
at Ocimum Biosolutions, Hyderabad. After sequencing, the complete nucleotide sequences of …
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2013
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[HTML] Differentially Expressed Genes during Contrasting Growth Stages of Artemisia annua for Artemisinin Content
analysis program of Ocimum Biosolutions, … was compared to in house sequences using NCBI’s …
[PDF] High resolution melt curve analysis for the detection of A1, A2 β-casein variants in Indian cows
sent to Ocimum Biosolutions Pvt Ltd, Bangalore for sequencing. Sequence results indicated …
HTML] Methods of cell lysis and effect of detergents for the recovery of nitrile metabolizing enzyme from Amycolatopsis sp. IITR215
sequences … The 16S rRNA gene sequence of strain Amycolatopsis sp. IITR215 determined …
Detection of Booroola (FecB) mutation in Indian sheep––Nilagiri
and Ocimum Biosolutions (Hyderabad, India) to verify and deduce the nucleotide sequences. …
[PDF] Indigofera himachalensis (Fabaceae: Indigofereae), a new species from Himachal Pradesh, India
PCR products were sequenced in both directions and forward and reverse sequences were …
[PDF] Detection of Denitrifying population from upflow anaerobic packed bed column using PCR
sequences were identified on the basis of sequence similarity, by comparison with the sequences …
2012
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band was cut and eluted. The products were sequenced through the sequencing
service provided by Ocimum Biosolutions, Hyderabad, India. …
Enzymatic degradation of textile dye Reactive Orange 13 by newly isolated bacterial strain< i> Alcaligenes faecalis</i> PMS-1
Alcaligenes species. 16S rDNA sequencing of isolated bacteria was carried out at
Ocimum Biosolutions, Hyderabad, India. The nucleotide sequence …
[PDF] Sphingosine 1-phosphate receptor 5 mediates the immune quiescence of the human brain endothelial barrier
The Netherlands) (Table 2), RNA was isolated using the … qPCR reactions were performed in an
ABI7900HT sequence detection system with the SYBR Green method (Applied …
[HTML] Cloning, Sequencing and In Silico Analysis of Omp C of Salmonella Typhimurium
colony PCR amplification. The cloned product was sequenced by Ocimum Biosolutions
Ltd., Hyderabad. The sequence was submitted to NCBI. 2.3. …
[CITATION] Quantitative competitive PCR for the detection and quantification of genetically modified cotton event MON-531
Simultaneous adsorption and bioaccumulation: A study on continuous mass transfer in column reactor
sequence similarity searches were conducted using BLAST program of NCBI and the phylogenetic
analysis was carried out using the MEGA package version 4. Carrier Preparation. …
[PDF] In vitro characterization of Saccharomyces cerevisiae HM535662 obtained from an indigenous fermented food “Bhaturu” of Western Himalayas
(Life Technologies India, Pvt. Ltd), by a commercial sequencing facility (Ocimum
biosolutions, Pvt. Ltd. Hyderabad, India). The corrected sequence …
Optimization of physical parameters for batch mode Zn (II) ion removal from liquid phase: A potential biosorption study
was cut from the gel and purified using Bangalore Genei PCR purification kit, and after elution
the product was sent to Ocimum biosolutions for sequencing. …
[PDF] Journal of Chemical, Biological and Physical Sciences
constant encouragement and support. We are also grateful to CEPC Laboratory, Kollam for the
GC-MS analysis and Ocimum Biosolutions, Hyderabad for Sequencing work. …
DNA sequencing and RFLP analyses. … Affymetrix Scanner 428, Imagene and Genowiz softwares
by Ocimum Biosolutions (India) and subjected to arsinh transformation …
Cold-active extracellular α-amylase production from novel bacteria< i> Microbacterium foliorum</i> GA2 and< i> Bacillus cereus</i> GA6 isolated from Gangotri …
in both the directions to check the validity of the sequence. Sequencing was done by
Ocimum Biosolutions, India. 2.5.3. Antibiotic susceptibility test. …
[PDF] Full length cDNA synthesis of differentially displayed ESTs during lactation in the Indian buffalo (Bubalus bubalis)
out using Megablast … Seven sense primers were designed and commercially synthesized (OCIMUM
BIOSOLUTIONS, Hyderabad) from the 5′ RACE sequences (Table 2) using …
[PDF] Transcription of gD and gI gene in BHV-1 infected cells
(Ocimum Biosolutions, Hyderabad). The sequence was aligned with BHV-1 sequence and the
TSS identified from the aligned sequence. Results: Computational analysis: …
Fingolimod attenuates ceramide-induced blood–brain barrier dysfunction in multiple sclerosis by targeting reactive astrocytes
The Netherlands). … Quantitative PCR (qPCR) reactions were performed in an ABI7900HT sequence
detection system using the SYBR Green method (Applied Biosys- tems, New York …
Differential expression of silent polyketide biosynthesis gene clusters in chemostat cultures of< i> Aspergillus nidulans</i>
encoding polyketide synthases (PKSs) or nonribosomal peptide synthetases … Custom made A.
nidulans full genome microarrays (Ocimum Biosolutions) were used in these studies. …
Superparamagnetic Nanoparticles Based Immunomagnetic SeparationMultiplex Polymerase Chain Reaction Assay for Detection of Salmonella
used for detec- tion of the presence of Salmonella Typhi and Salmonella … All the oligonucleotide
primers were custom synthesized from Ocimum Biosolutions Pvt Ltd., Netherlands. …
Identification and distribution of putative virulence genes in clinical strains of Yersinia enterocolitica biovar 1A by suppression subtractive hybridization
facilities provided by M/s Link Biotech (Ocimum Biosolutions, Delhi) and M/S Lab India (Gurgaon,
India) were used for sequencing of the samples. The sequences obtained were …
[PDF] Non structural protein of avian influenza A (H11N1) virus is a weaker suppressor of immune responses but capable of inducing apoptosis in host cells
screened by sequencing. … Data was analyzed using GENOWIZ Microarray and Pathway
analysis tool (Ocimum Biosolutions, Hyderabad, India). …
Polymorphism in RD1 locus and its effect on down stream genes among South Indian clinical isolates of M. tuberculosis
kit 111 (Ocimum biosolutions, Hyderabad, India) according to the instructions of the
112 manufacturer. … 134 135 Automated DNA sequencing 136 …
A novel mechanism of gall midge resistance in the rice variety Kavya revealed by microarray analysis
out by Ocimum Biosolutions (Hyderabad, India … The data were analyzed using the 7500 Sequence
Detection Software (Applied Biosystems, USA) with default baseline and threshold. …
[PDF] Inhibition of HIV-1 Integrase gene expression by 10-23 DNAzyme
molecule, which was flanked by two substrate recognition arm of seven to nine deoxynucleo-
tides. All the DNAzymes were synthesized by Ocimum Biosolutions, Hyderabad, India. …
GenoType MTBDRsl performance on clinical samples with diverse genetic background
amplified direct repeat locus of clinical isolates was investigated using the Spoligotyping kit
(Ocimum Biosolutions, Hyderabad, India) following the manufacturer’s instructions. …
A promising strain of Streptomyces sp. with agricultural traits for growth promotion and disease management
blue/white screening and recombinant plasmid DNA was isolated for further restriction analysis
and sequencing of the insert on a 3130XL Genetic analyzer (Applied Biosystems, USA …
Rapid and Sensitive Detection of Major Uropathogens in a Single-Pot Multiplex PCR Assay
with the primer sequence used in the mPCR assay. … All the primers were synthesized on
custom-order from Ocimum Biosolutions, Netherlands. Optimization of Uniplex and mPCR …
Performance comparison of multiple microarray platforms for gene expression profiling.
levels of genes and … Biosystems (ABI), Amersham (now GE Healthcare), Compugen (now
Sigma-Genosys), Mergen, MWG BioTech (now Ocimum Biosolutions), Operon, “academic …
conservation among Salmonella serovars (Cohen et al. 1996; Townsend et al. 2001). … All primer
sequences were synthe- sized by Ocimum Biosolutions (Indianapolis, IN). …
Antagonism of microRNA Function in Zebrafish Embryos by Using Locked Nucleic Acid Enzymes (LNAzymes)
were purchased from Ocimum Biosolutions (Hyderabad, India … RT products were then used for
real-time PCR with mature miRNA sequence as the forward primer and the universal …
Demonstration of sequential adaptation strategy for developing salt tolerance in bacteria for wastewater treatment: A study using< i> Escherichia coli</i> as model
Biosolutions, Hyderabad); the gene probe details with chip have been described in Supplementary
Table 1. The … Term and GO ID, Primer Sequence(5′-3′), Product length (bp). …
Gene expression profile of early in vitro biofilms of Streptococcus pneumoniae
India). Global lowess was used for data analysis with normalization. … Primers were designed by
standard procedures from nucleotide sequence of S. pneumoniae R6 strain …
New insight into the molecular characterization of isoniazid and rifampicin resistant< i> Gene Expression Profiling of Escherichia coli in Response to Interactions with the Lettuce Rhizosphere
(OciChip™,Ocimum Biosolutions Inc., Indianapolis, IN) were used in this study. … primers listed
in Table 2, using an ABI 7500 real-time PCR system with sequence detection …
The Effect of Secretory Factors of Adipose-Derived Stem Cells on Human Keratinocytes
303 Type VI collagen, alpha-2, isoform 2C2a’ NP_478055 86 9 96–393 12% … Trypsin spot Protein
name Accession # Protein score Pep. count Position Sequence coverage …
a Yersinia enterocolitica “old world” (3/O:9) strain and comparison with the “new world”
(1B/O:8) strain,” Journal of Clinical Microbiology, vol. 49, no. 4, pp. … 2.1.1. Sequence Retrieval. …
[HTML] Functional Genomic Analysis of Candida glabrata-Macrophage Interaction: Role of Chromatin Remodeling in Virulence
and sequencing analyses, to 56 C. glabrata ORFs and 20 intergenic regions
(http://www.genolevures.org) (Tables S1 and S2). Using the …
2011
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Molecular cloning, overexpression, purification, crystallization and preliminary X-ray diffraction studies of histidinol phosphate aminotransferase (HisC2) from …
of the clone were confirmed by DNA sequencing (Ocimum Biosolutions, India). A
construct with the following expression sequence, consisting …
[PDF] Potential of Alkaline Protease Isolated from Thermoactinomyces sp. RM4 as an Alternative to Conventional Chemicals in Leather Industry Dehairing Process
information of amplified fragment was obtained through the sequencing services
provided by Ocimum Biosolutions Pvt. Ltd., Hyderabad, India. …
Roohi, M. Kuddus, IZ Ahmad and JM Arif
Sequencing was carried out using the same set of primers in both the directions to check the
validity of the sequence. Sequencing was done by Ocimum Biosolutions, India. …
[PDF] Production of Cold-active Extracellular a-Amylase by Newly Isolated Microbacterium foliorum GA2 from Gangotri glacier, Western Himalaya, India
plasmid curing: The antibiotic susceptibility of the isolate was studied on Muller-Hinton
agar media by disc diffusion methods (Bauer elf al., 1966). …
HisB from Mycobacterium tuberculosis: cloning, overexpression in Mycobacterium smegmatis, purification, crystallization and preliminary X-ray crystallographic …
and its directionality were confirmed by DNA sequencing (Ocimum Biosolutions,
Hyderabad, India). Table 1 Primers used for PCR amplification. …
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2010
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Sphingosine 1‐phosphate receptor 1 and 3 are upregulated in multiple sclerosis lesions
IJsselstein, The Netherlands). Following primer sequences were used: S1P1F 5′-…
Functionalization of mono‐and oligonucleotides with phosphane ligands by amide bond formation
… [b] This strand (1 μmol) was purchased from Ocimum Biosolutions but cleaved from the solid
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2009
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Parkinson’s disease-associated parkin colocalizes with Alzheimer’s disease and multiple sclerosis brain lesions
IJsselstein, the Netherlands). Statistical analysis was performed using one-way ANOVA followed
Gene expression profiling of alpha‐radiation‐induced rat osteosarcomas: Identification of dysregulated genes involved in radiation‐induced tumorigenesis of bone
used to obtain genome-wide expression profiles of radiation-induced OS and normal OB. We
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2008
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2007
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Genome sequence of Avery’s virulent serotype 2 strain D39 of Streptococcus pneumoniae and comparison with that of unencapsulated laboratory strain R6
five repeats reported previously for R6 into this region of the D39 genome sequence
(see the text). … (now available from Ocimum Biosolutions). …
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